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Welcome to msproteomicstools's documentation!
=============================================
`msproteomicstools` is a Python library that can be used in LC-MS/MS based
proteomics. It features a core library called `msproteomicstoolslib` and several
associated executable scripts that use the library as well as a GUI for
visualizing chromatograms, specifically output from `OpenSWATH
`_.
For questions, bug reports and contributions, please visit the official `GitHub page
`_.
Contents of the library:
.. toctree::
:maxdepth: 2
msproteomicstoolslib.algorithms
msproteomicstoolslib.math
msproteomicstoolslib.data_structures
msproteomicstoolslib.format
msproteomicstoolslib.cython
Contents of the GUI code:
.. toctree::
:maxdepth: 3
tapir
Contents of the executables:
.. toctree::
:maxdepth: 2
analysis.alignment
Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`